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Guides
Model Building (liesel.model)
Data
Calc
Dist
obs()
param()
GraphBuilder
Model
plot_vars()
plot_nodes()
MCMC Sampling (liesel.goose)
LieselInterface
DataclassInterface
DictInterface
NamedTupleInterface
PyMCInterface
EngineBuilder
Engine
RWKernel
IWLSKernel
HMCKernel
NUTSKernel
GibbsKernel
SamplingResults
Summary
plot_param()
plot_trace()
plot_density()
plot_pairs()
plot_cor()
Tutorials
API Reference
liesel.model
liesel.model.distreg
beta_jitter_fn()
dist_reg_mcmc()
tau2_gibbs_kernel()
tau2_jitter_fn()
DistRegBuilder
liesel.model.goose
finite_discrete_gibbs_kernel()
GooseModel
liesel.model.legacy
Addition()
Bijector()
ColumnStack()
DesignMatrix()
Hyperparameter()
InverseLink()
Obs()
PIT()
Param()
Parameter()
Predictor()
RegressionCoef()
Response()
Smooth()
SmoothingParam()
PITCalc
liesel.model.model
load_model()
save_model()
GraphBuilder
Model
liesel.model.nodes
obs()
param()
add_group()
Calc
Data
Dist
Group
InputGroup
Node
NodeState
TransientCalc
TransientDist
TransientIdentity
TransientNode
Var
liesel.model.viz
plot_nodes()
plot_vars()
liesel.goose
plot_cor()
plot_density()
plot_param()
plot_trace()
plot_scatter()
plot_pairs()
stan_epochs()
DictInterface
DictInterface.extract_position()
DictInterface.log_prob()
DictInterface.update_state()
DataclassInterface
DataclassInterface.extract_position()
DataclassInterface.log_prob()
DataclassInterface.update_state()
DictModel
DictModel.extract_position()
DictModel.log_prob()
DictModel.update_state()
DataClassModel
DataClassModel.extract_position()
DataClassModel.log_prob()
DataClassModel.update_state()
LieselInterface
LieselInterface.extract_position()
LieselInterface.log_prob()
LieselInterface.update_state()
Engine
Engine.append_epoch()
Engine.get_results()
Engine.is_sampling_done()
Engine.sample_all_epochs()
Engine.sample_next_epoch()
Engine.current_epoch
EngineBuilder
EngineBuilder.add_kernel()
EngineBuilder.add_quantity_generator()
EngineBuilder.build()
EngineBuilder.set_duration()
EngineBuilder.set_engine_seed()
EngineBuilder.set_epochs()
EngineBuilder.set_initial_values()
EngineBuilder.set_jitter_fns()
EngineBuilder.set_model()
EngineBuilder.engine_seed
EngineBuilder.epochs
EngineBuilder.jitter_fns
EngineBuilder.kernels
EngineBuilder.model_state
EngineBuilder.quantity_generators
EngineBuilder.show_progress
EngineBuilder.positions_included
EngineBuilder.positions_excluded
EpochConfig
EpochConfig.to_state()
EpochConfig.type
EpochConfig.duration
EpochConfig.thinning
EpochConfig.optional
EpochType
EpochType.is_adaptation()
EpochType.is_warmup()
EpochType.INITIAL_VALUES
EpochType.FAST_ADAPTATION
EpochType.SLOW_ADAPTATION
EpochType.BURNIN
EpochType.POSTERIOR
GibbsKernel
GibbsKernel.end_epoch()
GibbsKernel.end_warmup()
GibbsKernel.has_model()
GibbsKernel.init_state()
GibbsKernel.log_prob_fn()
GibbsKernel.position()
GibbsKernel.set_model()
GibbsKernel.start_epoch()
GibbsKernel.transition()
GibbsKernel.tune()
GibbsKernel.error_book
GibbsKernel.identifier
GibbsKernel.model
GibbsKernel.needs_history
GibbsKernel.position_keys
HMCKernel
HMCKernel.end_epoch()
HMCKernel.end_warmup()
HMCKernel.has_model()
HMCKernel.init_state()
HMCKernel.log_prob_fn()
HMCKernel.position()
HMCKernel.set_model()
HMCKernel.start_epoch()
HMCKernel.transition()
HMCKernel.tune()
HMCKernel.error_book
HMCKernel.identifier
HMCKernel.model
HMCKernel.needs_history
HMCKernel.position_keys
IWLSKernel
IWLSKernel.end_epoch()
IWLSKernel.end_warmup()
IWLSKernel.has_model()
IWLSKernel.init_state()
IWLSKernel.log_prob_fn()
IWLSKernel.position()
IWLSKernel.set_model()
IWLSKernel.start_epoch()
IWLSKernel.transition()
IWLSKernel.tune()
IWLSKernel.error_book
IWLSKernel.identifier
IWLSKernel.model
IWLSKernel.needs_history
IWLSKernel.position_keys
MHKernel
MHKernel.end_epoch()
MHKernel.end_warmup()
MHKernel.has_model()
MHKernel.init_state()
MHKernel.log_prob_fn()
MHKernel.position()
MHKernel.set_model()
MHKernel.start_epoch()
MHKernel.transition()
MHKernel.tune()
MHKernel.error_book
MHKernel.identifier
MHKernel.model
MHKernel.needs_history
MHKernel.position_keys
MHProposal
MHProposal.count()
MHProposal.index()
MHProposal.log_correction
MHProposal.position
ModelInterface
ModelInterface.extract_position()
ModelInterface.log_prob()
ModelInterface.update_state()
NamedTupleInterface
NamedTupleInterface.extract_position()
NamedTupleInterface.log_prob()
NamedTupleInterface.update_state()
NUTSKernel
NUTSKernel.end_epoch()
NUTSKernel.end_warmup()
NUTSKernel.has_model()
NUTSKernel.init_state()
NUTSKernel.log_prob_fn()
NUTSKernel.position()
NUTSKernel.set_model()
NUTSKernel.start_epoch()
NUTSKernel.transition()
NUTSKernel.tune()
NUTSKernel.error_book
NUTSKernel.identifier
NUTSKernel.model
NUTSKernel.needs_history
NUTSKernel.position_keys
RWKernel
RWKernel.end_epoch()
RWKernel.end_warmup()
RWKernel.has_model()
RWKernel.init_state()
RWKernel.log_prob_fn()
RWKernel.position()
RWKernel.set_model()
RWKernel.start_epoch()
RWKernel.transition()
RWKernel.tune()
RWKernel.error_book
RWKernel.identifier
RWKernel.model
RWKernel.needs_history
RWKernel.position_keys
Summary
Summary.error_df()
Summary.from_result()
Summary.from_results()
Summary.to_dataframe()
Summary.per_chain
Summary.quantities
Summary.config
Summary.sample_info
Summary.error_summary
Summary.kernels_by_pos_key
SamplingResults
SamplingResults.get_error_log()
SamplingResults.get_kernels_by_pos_key()
SamplingResults.get_posterior_samples()
SamplingResults.get_posterior_transition_infos()
SamplingResults.get_samples()
SamplingResults.get_tuning_times()
SamplingResults.pkl_load()
SamplingResults.pkl_save()
SamplingResults.positions
SamplingResults.transition_infos
SamplingResults.generated_quantities
SamplingResults.tuning_infos
SamplingResults.kernel_states
SamplingResults.full_model_states
SamplingResults.kernel_classes
SamplingResults.kernels_by_pos_key
liesel.distributions
liesel.distributions.copulas
GaussianCopula
liesel.distributions.mvn_degen
MultivariateNormalDegenerate
liesel.bijectors
liesel.bijectors.algebraic_sigmoid
AlgebraicSigmoid
Experimental API
liesel.experimental
liesel.experimental.arviz
to_arviz_inference_data()
liesel.experimental.pymc
PyMCInterface
.rst
.pdf
tau2_jitter_fn()
Contents
tau2_jitter_fn()
tau2_jitter_fn()
#
liesel.model.distreg.
tau2_jitter_fn
(
key
,
val
)
#
Contents
tau2_jitter_fn()
