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API Reference
liesel.model
liesel.model.distreg
liesel.model.distreg.dist_reg_mcmc
liesel.model.distreg.tau2_gibbs_kernel
DistRegBuilder
liesel.model.goose
GooseModel
liesel.model.legacy
liesel.model.legacy.Addition
liesel.model.legacy.Bijector
liesel.model.legacy.ColumnStack
liesel.model.legacy.DesignMatrix
liesel.model.legacy.Hyperparameter
liesel.model.legacy.InverseLink
liesel.model.legacy.PIT
liesel.model.legacy.Parameter
liesel.model.legacy.Predictor
liesel.model.legacy.RegressionCoef
liesel.model.legacy.Response
liesel.model.legacy.Smooth
liesel.model.legacy.SmoothingParam
PITCalc
liesel.model.model
liesel.model.model.load_model
liesel.model.model.save_model
GraphBuilder
Model
liesel.model.nodes
liesel.model.nodes.Obs
liesel.model.nodes.Param
liesel.model.nodes.add_group
Calc
Data
Dist
InputGroup
Node
NodeState
TransientCalc
TransientDist
TransientIdentity
TransientNode
Var
liesel.model.viz
liesel.model.viz.plot_nodes
liesel.model.viz.plot_vars
liesel.goose
liesel.goose.builder
EngineBuilder
liesel.goose.chain
Chain
EpochChain
EpochChainManager
ListChain
ListEpochChain
liesel.goose.da
liesel.goose.da.da_finalize
liesel.goose.da.da_init
liesel.goose.da.da_step
DAKernelState
liesel.goose.engine
liesel.goose.engine.stack_for_multi
Carry
Engine
KernelErrorLog
SamplingResult
SamplingResults
liesel.goose.epoch
EpochConfig
EpochManager
EpochState
EpochType
liesel.goose.gibbs
GibbsKernel
liesel.goose.hmc
HMCKernel
HMCKernelState
HMCTransitionInfo
liesel.goose.iwls
IWLSKernel
IWLSKernelState
liesel.goose.iwls_utils
liesel.goose.iwls_utils.mvn_log_prob
liesel.goose.iwls_utils.mvn_sample
liesel.goose.iwls_utils.solve
liesel.goose.kernel
DefaultTransitionInfo
DefaultTuningInfo
ModelMixin
TransitionMixin
TransitionOutcome
TuningMixin
TuningOutcome
WarmupOutcome
liesel.goose.kernel_sequence
KerSeqFinalizeWarmupOutput
KerSeqTransitionOutput
KerSeqTuningOutput
KernelSequence
liesel.goose.mh
liesel.goose.mh.mh_error_book
liesel.goose.mh.mh_step
liesel.goose.mh_kernel
MHKernel
MHProposal
liesel.goose.mm
liesel.goose.mm.tune_inv_mm_diag
liesel.goose.mm.tune_inv_mm_full
liesel.goose.models
DataClassModel
DictModel
liesel.goose.nuts
NUTSKernel
NUTSKernelState
NUTSTransitionInfo
liesel.goose.pytree
liesel.goose.pytree.as_strong_pytree
liesel.goose.pytree.concatenate_leaves
liesel.goose.pytree.register_dataclass_as_pytree
liesel.goose.pytree.slice_leaves
liesel.goose.pytree.split_and_transpose
liesel.goose.pytree.split_leaves
liesel.goose.pytree.squeeze_leaves
liesel.goose.pytree.stack_leaves
liesel.goose.rw
RWKernel
RWKernelState
liesel.goose.summary_m
ErrorSummaryForOneCode
Summary
liesel.goose.summary_viz
liesel.goose.summary_viz.plot_cor
liesel.goose.summary_viz.plot_density
liesel.goose.summary_viz.plot_pairs
liesel.goose.summary_viz.plot_param
liesel.goose.summary_viz.plot_scatter
liesel.goose.summary_viz.plot_trace
liesel.goose.summary_viz.save_figure
liesel.goose.types
GeneratedQuantity
Kernel
ModelInterface
QuantityGenerator
TransitionInfo
TuningInfo
liesel.goose.warmup
liesel.goose.warmup.stan_epochs
liesel.distributions
liesel.distributions.copulas
GaussianCopula
liesel.distributions.mvn_degen
MultivariateNormalDegenerate
liesel.bijectors
liesel.bijectors.algebraic_sigmoid
AlgebraicSigmoid
Experimental API
liesel.experimental
liesel.experimental.pymc
PyMCInterface
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
A
acceptance_prob (liesel.goose.hmc.HMCTransitionInfo attribute)
(liesel.goose.kernel.DefaultTransitionInfo attribute)
(liesel.goose.nuts.NUTSTransitionInfo attribute)
(liesel.goose.types.TransitionInfo attribute)
add() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
add_group() (in module liesel.model.nodes)
(liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
add_kernel() (liesel.goose.builder.EngineBuilder method)
add_np_smooth() (liesel.model.distreg.DistRegBuilder method)
add_p_smooth() (liesel.model.distreg.DistRegBuilder method)
add_predictor() (liesel.model.distreg.DistRegBuilder method)
add_quantity_generator() (liesel.goose.builder.EngineBuilder method)
add_response() (liesel.model.distreg.DistRegBuilder method)
Addition() (in module liesel.model.legacy)
advance_epoch() (liesel.goose.chain.EpochChainManager method)
advance_time() (liesel.goose.epoch.EpochState method)
AlgebraicSigmoid (class in liesel.bijectors.algebraic_sigmoid)
all_input_nodes() (liesel.model.legacy.PITCalc method)
(liesel.model.nodes.Calc method)
(liesel.model.nodes.Data method)
(liesel.model.nodes.Dist method)
(liesel.model.nodes.InputGroup method)
(liesel.model.nodes.Node method)
(liesel.model.nodes.TransientCalc method)
(liesel.model.nodes.TransientDist method)
(liesel.model.nodes.TransientIdentity method)
(liesel.model.nodes.TransientNode method)
(liesel.model.nodes.Var method)
all_input_vars() (liesel.model.nodes.Var method)
all_output_nodes() (liesel.model.legacy.PITCalc method)
(liesel.model.nodes.Calc method)
(liesel.model.nodes.Data method)
(liesel.model.nodes.Dist method)
(liesel.model.nodes.InputGroup method)
(liesel.model.nodes.Node method)
(liesel.model.nodes.TransientCalc method)
(liesel.model.nodes.TransientDist method)
(liesel.model.nodes.TransientIdentity method)
(liesel.model.nodes.TransientNode method)
(liesel.model.nodes.Var method)
all_output_vars() (liesel.model.nodes.Var method)
append() (liesel.goose.chain.Chain method)
(liesel.goose.chain.EpochChain method)
(liesel.goose.chain.EpochChainManager method)
(liesel.goose.chain.ListChain method)
(liesel.goose.chain.ListEpochChain method)
(liesel.goose.epoch.EpochManager method)
append_epoch() (liesel.goose.engine.Engine method)
as_strong_pytree() (in module liesel.goose.pytree)
at (liesel.model.nodes.Dist property)
(liesel.model.nodes.TransientDist property)
auto_update (liesel.model.model.Model property)
B
Bijector() (in module liesel.model.legacy)
build() (liesel.goose.builder.EngineBuilder method)
build_model() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
BURNIN (liesel.goose.epoch.EpochType attribute)
C
Calc (class in liesel.model.nodes)
Carry (class in liesel.goose.engine)
Chain (class in liesel.goose.chain)
clear_state() (liesel.model.legacy.PITCalc method)
(liesel.model.nodes.Calc method)
(liesel.model.nodes.Data method)
(liesel.model.nodes.Dist method)
(liesel.model.nodes.InputGroup method)
(liesel.model.nodes.Node method)
(liesel.model.nodes.TransientCalc method)
(liesel.model.nodes.TransientDist method)
(liesel.model.nodes.TransientIdentity method)
(liesel.model.nodes.TransientNode method)
ColumnStack() (in module liesel.model.legacy)
combine() (liesel.goose.chain.EpochChainManager method)
combine_all() (liesel.goose.chain.EpochChainManager method)
combine_filtered() (liesel.goose.chain.EpochChainManager method)
concatenate_leaves() (in module liesel.goose.pytree)
config (liesel.goose.epoch.EpochState attribute)
(liesel.goose.summary_m.Summary attribute)
copy() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
copy_nodes_and_vars() (liesel.model.model.Model method)
count() (liesel.goose.engine.KernelErrorLog method)
(liesel.goose.mh_kernel.MHProposal method)
(liesel.goose.summary_m.ErrorSummaryForOneCode method)
(liesel.model.nodes.NodeState method)
count_node_names() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
count_per_chain (liesel.goose.summary_m.ErrorSummaryForOneCode attribute)
count_per_chain_posterior (liesel.goose.summary_m.ErrorSummaryForOneCode attribute)
count_var_names() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
current_epoch (liesel.goose.chain.EpochChainManager property)
(liesel.goose.engine.Engine property)
D
da_finalize() (in module liesel.goose.da)
da_init() (in module liesel.goose.da)
da_step() (in module liesel.goose.da)
DAKernelState (class in liesel.goose.da)
Data (class in liesel.model.nodes)
DataClassModel (class in liesel.goose.models)
DefaultTransitionInfo (class in liesel.goose.kernel)
DefaultTuningInfo (class in liesel.goose.kernel)
DesignMatrix() (in module liesel.model.legacy)
DictModel (class in liesel.goose.models)
Dist (class in liesel.model.nodes)
dist_node (liesel.model.nodes.Var property)
dist_reg_mcmc() (in module liesel.model.distreg)
DistRegBuilder (class in liesel.model.distreg)
distribution (liesel.model.nodes.Dist property)
(liesel.model.nodes.TransientDist property)
divergent (liesel.goose.hmc.HMCTransitionInfo attribute)
(liesel.goose.nuts.NUTSTransitionInfo attribute)
duration (liesel.goose.epoch.EpochConfig attribute)
E
end_epoch() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel_sequence.KernelSequence method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
end_warmup() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel_sequence.KernelSequence method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
Engine (class in liesel.goose.engine)
engine_seed (liesel.goose.builder.EngineBuilder property)
EngineBuilder (class in liesel.goose.builder)
epoch (liesel.goose.chain.EpochChain property)
(liesel.goose.chain.ListEpochChain property)
(liesel.goose.engine.Carry attribute)
EpochChain (class in liesel.goose.chain)
EpochChainManager (class in liesel.goose.chain)
EpochConfig (class in liesel.goose.epoch)
EpochManager (class in liesel.goose.epoch)
epochs (liesel.goose.builder.EngineBuilder property)
EpochState (class in liesel.goose.epoch)
EpochType (class in liesel.goose.epoch)
error_book (liesel.goose.gibbs.GibbsKernel attribute)
(liesel.goose.hmc.HMCKernel attribute)
(liesel.goose.iwls.IWLSKernel attribute)
(liesel.goose.mh_kernel.MHKernel attribute)
(liesel.goose.nuts.NUTSKernel attribute)
(liesel.goose.rw.RWKernel attribute)
(liesel.goose.types.Kernel attribute)
(liesel.goose.types.QuantityGenerator attribute)
error_code (liesel.goose.hmc.HMCTransitionInfo attribute)
(liesel.goose.kernel.DefaultTransitionInfo attribute)
(liesel.goose.kernel.DefaultTuningInfo attribute)
(liesel.goose.kernel.WarmupOutcome attribute)
(liesel.goose.nuts.NUTSTransitionInfo attribute)
(liesel.goose.summary_m.ErrorSummaryForOneCode attribute)
(liesel.goose.types.GeneratedQuantity attribute)
(liesel.goose.types.TransitionInfo attribute)
(liesel.goose.types.TuningInfo attribute)
error_codes (liesel.goose.engine.KernelErrorLog attribute)
(liesel.goose.kernel_sequence.KerSeqFinalizeWarmupOutput attribute)
error_msg (liesel.goose.summary_m.ErrorSummaryForOneCode attribute)
error_sum (liesel.goose.da.DAKernelState attribute)
(liesel.goose.hmc.HMCKernelState attribute)
(liesel.goose.iwls.IWLSKernelState attribute)
(liesel.goose.nuts.NUTSKernelState attribute)
(liesel.goose.rw.RWKernelState attribute)
error_summary (liesel.goose.summary_m.Summary attribute)
ErrorSummaryForOneCode (class in liesel.goose.summary_m)
extra (liesel.model.nodes.NodeState attribute)
extract_position() (liesel.experimental.pymc.PyMCInterface method)
(liesel.goose.models.DataClassModel method)
(liesel.goose.models.DictModel method)
(liesel.goose.types.ModelInterface method)
(liesel.model.goose.GooseModel method)
F
FAST_ADAPTATION (liesel.goose.epoch.EpochType attribute)
flag_outdated() (liesel.model.legacy.PITCalc method)
(liesel.model.nodes.Calc method)
(liesel.model.nodes.Data method)
(liesel.model.nodes.Dist method)
(liesel.model.nodes.InputGroup method)
(liesel.model.nodes.Node method)
(liesel.model.nodes.TransientCalc method)
(liesel.model.nodes.TransientDist method)
(liesel.model.nodes.TransientIdentity method)
(liesel.model.nodes.TransientNode method)
from_penalty() (liesel.distributions.mvn_degen.MultivariateNormalDegenerate class method)
from_result() (liesel.goose.summary_m.Summary class method)
from_results() (liesel.goose.summary_m.Summary static method)
full_model_states (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
function (liesel.model.nodes.Calc property)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientIdentity property)
G
GaussianCopula (class in liesel.distributions.copulas)
generate() (liesel.goose.types.QuantityGenerator method)
generated_quantities (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
GeneratedQuantity (class in liesel.goose.types)
get() (liesel.goose.chain.Chain method)
(liesel.goose.chain.EpochChain method)
(liesel.goose.chain.ListChain method)
(liesel.goose.chain.ListEpochChain method)
get_current_chain() (liesel.goose.chain.EpochChainManager method)
get_current_epoch() (liesel.goose.chain.EpochChainManager method)
get_epochs() (liesel.goose.chain.EpochChainManager method)
get_error_log() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
get_initial_state() (liesel.experimental.pymc.PyMCInterface method)
get_kernels() (liesel.goose.kernel_sequence.KernelSequence method)
get_kernels_by_pos_key() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
get_posterior_samples() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
get_posterior_transition_infos() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
get_results() (liesel.goose.engine.Engine method)
get_samples() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
get_specific_chain() (liesel.goose.chain.EpochChainManager method)
get_tuning_times() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
GibbsKernel (class in liesel.goose.gibbs)
GooseModel (class in liesel.model.goose)
GraphBuilder (class in liesel.model.model)
groups (liesel.model.legacy.PITCalc property)
(liesel.model.nodes.Calc property)
(liesel.model.nodes.Data property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.InputGroup property)
(liesel.model.nodes.Node property)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.TransientIdentity property)
(liesel.model.nodes.TransientNode property)
(liesel.model.nodes.Var property)
groups() (liesel.model.model.Model method)
H
has_dist (liesel.model.nodes.Var property)
has_model() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.ModelMixin method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
(liesel.goose.types.QuantityGenerator method)
has_more() (liesel.goose.epoch.EpochManager method)
HMCKernel (class in liesel.goose.hmc)
HMCKernelState (class in liesel.goose.hmc)
HMCTransitionInfo (class in liesel.goose.hmc)
Hyperparameter() (in module liesel.model.legacy)
I
identifier (liesel.goose.gibbs.GibbsKernel attribute)
(liesel.goose.hmc.HMCKernel attribute)
(liesel.goose.iwls.IWLSKernel attribute)
(liesel.goose.mh_kernel.MHKernel attribute)
(liesel.goose.nuts.NUTSKernel attribute)
(liesel.goose.rw.RWKernel attribute)
(liesel.goose.types.Kernel attribute)
(liesel.goose.types.QuantityGenerator attribute)
index() (liesel.goose.engine.KernelErrorLog method)
(liesel.goose.mh_kernel.MHProposal method)
(liesel.goose.summary_m.ErrorSummaryForOneCode method)
(liesel.model.nodes.NodeState method)
info (liesel.goose.kernel.TransitionOutcome attribute)
(liesel.goose.kernel.TuningOutcome attribute)
(liesel.model.nodes.Var attribute)
infos (liesel.goose.kernel_sequence.KerSeqTransitionOutput attribute)
(liesel.goose.kernel_sequence.KerSeqTuningOutput attribute)
init_dist() (liesel.model.nodes.Dist method)
(liesel.model.nodes.TransientDist method)
init_state() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
init_states() (liesel.goose.kernel_sequence.KernelSequence method)
INITIAL_VALUES (liesel.goose.epoch.EpochType attribute)
InputGroup (class in liesel.model.nodes)
inputs (liesel.model.legacy.PITCalc property)
(liesel.model.nodes.Calc property)
(liesel.model.nodes.Data property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.InputGroup property)
(liesel.model.nodes.Node property)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.TransientIdentity property)
(liesel.model.nodes.TransientNode property)
inverse_mass_matrix (liesel.goose.hmc.HMCKernelState attribute)
(liesel.goose.nuts.NUTSKernelState attribute)
InverseLink() (in module liesel.model.legacy)
is_adaptation() (liesel.goose.epoch.EpochType static method)
is_sampling_done() (liesel.goose.engine.Engine method)
is_warmup() (liesel.goose.epoch.EpochType static method)
IWLSKernel (class in liesel.goose.iwls)
IWLSKernelState (class in liesel.goose.iwls)
K
Kernel (class in liesel.goose.types)
kernel_classes (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
kernel_cls (liesel.goose.engine.KernelErrorLog attribute)
kernel_ident (liesel.goose.engine.KernelErrorLog attribute)
kernel_state (liesel.goose.kernel.TransitionOutcome attribute)
(liesel.goose.kernel.TuningOutcome attribute)
(liesel.goose.kernel.WarmupOutcome attribute)
kernel_states (liesel.goose.engine.Carry attribute)
(liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
(liesel.goose.kernel_sequence.KerSeqFinalizeWarmupOutput attribute)
(liesel.goose.kernel_sequence.KerSeqTransitionOutput attribute)
(liesel.goose.kernel_sequence.KerSeqTuningOutput attribute)
KernelErrorLog (class in liesel.goose.engine)
kernels (liesel.goose.builder.EngineBuilder property)
kernels_by_pos_key (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
(liesel.goose.summary_m.Summary attribute)
KernelSequence (class in liesel.goose.kernel_sequence)
KerSeqFinalizeWarmupOutput (class in liesel.goose.kernel_sequence)
KerSeqTransitionOutput (class in liesel.goose.kernel_sequence)
KerSeqTuningOutput (class in liesel.goose.kernel_sequence)
kwinputs (liesel.model.legacy.PITCalc property)
(liesel.model.nodes.Calc property)
(liesel.model.nodes.Data property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.InputGroup property)
(liesel.model.nodes.Node property)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.TransientIdentity property)
(liesel.model.nodes.TransientNode property)
L
leapfrog (liesel.goose.nuts.NUTSTransitionInfo attribute)
liesel.bijectors
module
liesel.bijectors.algebraic_sigmoid
module
liesel.distributions
module
liesel.distributions.copulas
module
liesel.distributions.mvn_degen
module
liesel.experimental
module
liesel.experimental.pymc
module
liesel.goose
module
liesel.goose.builder
module
liesel.goose.chain
module
liesel.goose.da
module
liesel.goose.engine
module
liesel.goose.epoch
module
liesel.goose.gibbs
module
liesel.goose.hmc
module
liesel.goose.iwls
module
liesel.goose.iwls_utils
module
liesel.goose.kernel
module
liesel.goose.kernel_sequence
module
liesel.goose.mh
module
liesel.goose.mh_kernel
module
liesel.goose.mm
module
liesel.goose.models
module
liesel.goose.nuts
module
liesel.goose.pytree
module
liesel.goose.rw
module
liesel.goose.summary_m
module
liesel.goose.summary_viz
module
liesel.goose.types
module
liesel.goose.warmup
module
liesel.model
module
liesel.model.distreg
module
liesel.model.goose
module
liesel.model.legacy
module
liesel.model.model
module
liesel.model.nodes
module
liesel.model.viz
module
ListChain (class in liesel.goose.chain)
ListEpochChain (class in liesel.goose.chain)
load_model() (in module liesel.model.model)
log_avg_step_size (liesel.goose.da.DAKernelState attribute)
(liesel.goose.hmc.HMCKernelState attribute)
(liesel.goose.iwls.IWLSKernelState attribute)
(liesel.goose.nuts.NUTSKernelState attribute)
(liesel.goose.rw.RWKernelState attribute)
log_correction (liesel.goose.mh_kernel.MHProposal attribute)
log_lik (liesel.model.model.Model property)
log_lik_node (liesel.model.distreg.DistRegBuilder property)
(liesel.model.model.GraphBuilder property)
log_prior (liesel.model.model.Model property)
log_prior_node (liesel.model.distreg.DistRegBuilder property)
(liesel.model.model.GraphBuilder property)
log_prob (liesel.model.model.Model property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.Var property)
log_prob() (liesel.experimental.pymc.PyMCInterface method)
(liesel.goose.models.DataClassModel method)
(liesel.goose.models.DictModel method)
(liesel.goose.types.ModelInterface method)
(liesel.model.goose.GooseModel method)
log_prob_fn() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.ModelMixin method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
log_prob_node (liesel.model.distreg.DistRegBuilder property)
(liesel.model.model.GraphBuilder property)
M
mh_error_book (in module liesel.goose.mh)
mh_step() (in module liesel.goose.mh)
MHKernel (class in liesel.goose.mh_kernel)
MHProposal (class in liesel.goose.mh_kernel)
minimize() (liesel.goose.hmc.HMCTransitionInfo method)
(liesel.goose.kernel.DefaultTransitionInfo method)
(liesel.goose.nuts.NUTSTransitionInfo method)
(liesel.goose.types.TransitionInfo method)
Model (class in liesel.model.model)
model (liesel.goose.gibbs.GibbsKernel property)
(liesel.goose.hmc.HMCKernel property)
(liesel.goose.iwls.IWLSKernel property)
(liesel.goose.kernel.ModelMixin property)
(liesel.goose.mh_kernel.MHKernel property)
(liesel.goose.nuts.NUTSKernel property)
(liesel.goose.rw.RWKernel property)
(liesel.model.legacy.PITCalc property)
(liesel.model.nodes.Calc property)
(liesel.model.nodes.Data property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.InputGroup property)
(liesel.model.nodes.Node property)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.TransientIdentity property)
(liesel.model.nodes.TransientNode property)
(liesel.model.nodes.Var property)
model_state (liesel.goose.builder.EngineBuilder property)
(liesel.goose.engine.Carry attribute)
(liesel.goose.kernel.TransitionOutcome attribute)
(liesel.goose.kernel_sequence.KerSeqTransitionOutput attribute)
ModelInterface (class in liesel.goose.types)
ModelMixin (class in liesel.goose.kernel)
module
liesel.bijectors
liesel.bijectors.algebraic_sigmoid
liesel.distributions
liesel.distributions.copulas
liesel.distributions.mvn_degen
liesel.experimental
liesel.experimental.pymc
liesel.goose
liesel.goose.builder
liesel.goose.chain
liesel.goose.da
liesel.goose.engine
liesel.goose.epoch
liesel.goose.gibbs
liesel.goose.hmc
liesel.goose.iwls
liesel.goose.iwls_utils
liesel.goose.kernel
liesel.goose.kernel_sequence
liesel.goose.mh
liesel.goose.mh_kernel
liesel.goose.mm
liesel.goose.models
liesel.goose.nuts
liesel.goose.pytree
liesel.goose.rw
liesel.goose.summary_m
liesel.goose.summary_viz
liesel.goose.types
liesel.goose.warmup
liesel.model
liesel.model.distreg
liesel.model.goose
liesel.model.legacy
liesel.model.model
liesel.model.nodes
liesel.model.viz
monitor (liesel.model.nodes.Node attribute)
mu (liesel.goose.da.DAKernelState attribute)
(liesel.goose.hmc.HMCKernelState attribute)
(liesel.goose.iwls.IWLSKernelState attribute)
(liesel.goose.nuts.NUTSKernelState attribute)
(liesel.goose.rw.RWKernelState attribute)
MultivariateNormalDegenerate (class in liesel.distributions.mvn_degen)
mvn_log_prob() (in module liesel.goose.iwls_utils)
mvn_sample() (in module liesel.goose.iwls_utils)
N
name (liesel.model.legacy.PITCalc property)
(liesel.model.nodes.Calc property)
(liesel.model.nodes.Data property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.InputGroup property)
(liesel.model.nodes.Node property)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.TransientIdentity property)
(liesel.model.nodes.TransientNode property)
(liesel.model.nodes.Var property)
needs_history (liesel.goose.gibbs.GibbsKernel attribute)
(liesel.goose.hmc.HMCKernel attribute)
(liesel.goose.iwls.IWLSKernel attribute)
(liesel.goose.mh_kernel.MHKernel attribute)
(liesel.goose.nuts.NUTSKernel attribute)
(liesel.goose.rw.RWKernel attribute)
(liesel.goose.types.Kernel attribute)
needs_seed (liesel.model.legacy.PITCalc property)
(liesel.model.nodes.Calc property)
(liesel.model.nodes.Data property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.InputGroup property)
(liesel.model.nodes.Node property)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.TransientIdentity property)
(liesel.model.nodes.TransientNode property)
next() (liesel.goose.epoch.EpochManager method)
Node (class in liesel.model.nodes)
node_graph (liesel.model.model.Model property)
nodes (liesel.model.model.GraphBuilder attribute)
(liesel.model.model.Model property)
(liesel.model.nodes.Var property)
NodeState (class in liesel.model.nodes)
nth_epoch (liesel.goose.epoch.EpochState attribute)
NUTSKernel (class in liesel.goose.nuts)
NUTSKernelState (class in liesel.goose.nuts)
NUTSTransitionInfo (class in liesel.goose.nuts)
O
Obs() (in module liesel.model.nodes)
observed (liesel.model.nodes.Var property)
optional (liesel.goose.epoch.EpochConfig attribute)
outdated (liesel.model.legacy.PITCalc property)
(liesel.model.nodes.Calc property)
(liesel.model.nodes.Data property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.InputGroup property)
(liesel.model.nodes.Node property)
(liesel.model.nodes.NodeState attribute)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.TransientIdentity property)
(liesel.model.nodes.TransientNode property)
outputs (liesel.model.legacy.PITCalc property)
(liesel.model.nodes.Calc property)
(liesel.model.nodes.Data property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.InputGroup property)
(liesel.model.nodes.Node property)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.TransientIdentity property)
(liesel.model.nodes.TransientNode property)
P
Param() (in module liesel.model.nodes)
parameter (liesel.model.nodes.Var property)
Parameter() (in module liesel.model.legacy)
per_chain (liesel.goose.summary_m.Summary attribute)
per_obs (liesel.model.nodes.Dist property)
(liesel.model.nodes.TransientDist property)
PIT() (in module liesel.model.legacy)
PITCalc (class in liesel.model.legacy)
pkl_load() (liesel.goose.engine.SamplingResult static method)
(liesel.goose.engine.SamplingResults static method)
pkl_save() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
plot_cor() (in module liesel.goose.summary_viz)
plot_density() (in module liesel.goose.summary_viz)
plot_nodes() (in module liesel.model.viz)
(liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
plot_pairs() (in module liesel.goose.summary_viz)
plot_param() (in module liesel.goose.summary_viz)
plot_scatter() (in module liesel.goose.summary_viz)
plot_trace() (in module liesel.goose.summary_viz)
plot_vars() (in module liesel.model.viz)
(liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
pop_nodes_and_vars() (liesel.model.model.Model method)
position (liesel.goose.mh_kernel.MHProposal attribute)
position() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.ModelMixin method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
position_keys (liesel.goose.gibbs.GibbsKernel attribute)
(liesel.goose.hmc.HMCKernel attribute)
(liesel.goose.iwls.IWLSKernel attribute)
(liesel.goose.kernel.ModelMixin attribute)
(liesel.goose.mh_kernel.MHKernel attribute)
(liesel.goose.nuts.NUTSKernel attribute)
(liesel.goose.rw.RWKernel attribute)
(liesel.goose.types.Kernel attribute)
position_moved (liesel.goose.hmc.HMCTransitionInfo attribute)
(liesel.goose.kernel.DefaultTransitionInfo attribute)
(liesel.goose.nuts.NUTSTransitionInfo attribute)
(liesel.goose.types.TransitionInfo attribute)
positions (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
positions_excluded (liesel.goose.builder.EngineBuilder attribute)
positions_included (liesel.goose.builder.EngineBuilder attribute)
POSTERIOR (liesel.goose.epoch.EpochType attribute)
Predictor() (in module liesel.model.legacy)
PyMCInterface (class in liesel.experimental.pymc)
Q
quantities (liesel.goose.summary_m.Summary attribute)
quantity_generators (liesel.goose.builder.EngineBuilder property)
QuantityGenerator (class in liesel.goose.types)
R
register_dataclass_as_pytree() (in module liesel.goose.pytree)
RegressionCoef() (in module liesel.model.legacy)
rename() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
rename_nodes() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
rename_vars() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
replace_node() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
replace_var() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
response (liesel.model.distreg.DistRegBuilder property)
Response() (in module liesel.model.legacy)
role (liesel.model.nodes.Var property)
RWKernel (class in liesel.goose.rw)
RWKernelState (class in liesel.goose.rw)
S
sample_all_epochs() (liesel.goose.engine.Engine method)
sample_info (liesel.goose.summary_m.Summary attribute)
sample_next_epoch() (liesel.goose.engine.Engine method)
SamplingResult (class in liesel.goose.engine)
SamplingResults (class in liesel.goose.engine)
save_figure() (in module liesel.goose.summary_viz)
save_model() (in module liesel.model.model)
set_duration() (liesel.goose.builder.EngineBuilder method)
set_engine_seed() (liesel.goose.builder.EngineBuilder method)
set_epochs() (liesel.goose.builder.EngineBuilder method)
set_initial_values() (liesel.goose.builder.EngineBuilder method)
set_inputs() (liesel.model.legacy.PITCalc method)
(liesel.model.nodes.Calc method)
(liesel.model.nodes.Data method)
(liesel.model.nodes.Dist method)
(liesel.model.nodes.InputGroup method)
(liesel.model.nodes.Node method)
(liesel.model.nodes.TransientCalc method)
(liesel.model.nodes.TransientDist method)
(liesel.model.nodes.TransientIdentity method)
(liesel.model.nodes.TransientNode method)
set_model() (liesel.goose.builder.EngineBuilder method)
(liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.ModelMixin method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
(liesel.goose.types.QuantityGenerator method)
set_seed() (liesel.model.model.Model method)
slice_leaves() (in module liesel.goose.pytree)
SLOW_ADAPTATION (liesel.goose.epoch.EpochType attribute)
Smooth() (in module liesel.model.legacy)
SmoothingParam() (in module liesel.model.legacy)
solve() (in module liesel.goose.iwls_utils)
split_and_transpose() (in module liesel.goose.pytree)
split_leaves() (in module liesel.goose.pytree)
squeeze_leaves() (in module liesel.goose.pytree)
stack_for_multi() (in module liesel.goose.engine)
stack_leaves() (in module liesel.goose.pytree)
stan_epochs() (in module liesel.goose.warmup)
start_epoch() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel_sequence.KernelSequence method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
state (liesel.model.legacy.PITCalc property)
(liesel.model.model.Model property)
(liesel.model.nodes.Calc property)
(liesel.model.nodes.Data property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.InputGroup property)
(liesel.model.nodes.Node property)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.TransientIdentity property)
(liesel.model.nodes.TransientNode property)
step_size (liesel.goose.da.DAKernelState attribute)
(liesel.goose.hmc.HMCKernelState attribute)
(liesel.goose.iwls.IWLSKernelState attribute)
(liesel.goose.nuts.NUTSKernelState attribute)
(liesel.goose.rw.RWKernelState attribute)
strong (liesel.model.nodes.Var property)
Summary (class in liesel.goose.summary_m)
T
tau2_gibbs_kernel() (in module liesel.model.distreg)
thinning (liesel.goose.epoch.EpochConfig attribute)
time (liesel.goose.epoch.EpochState attribute)
(liesel.goose.kernel.DefaultTuningInfo attribute)
(liesel.goose.types.TuningInfo attribute)
time_before_epoch (liesel.goose.epoch.EpochState attribute)
time_in_epoch (liesel.goose.epoch.EpochState attribute)
time_left() (liesel.goose.epoch.EpochState method)
to_dataframe() (liesel.goose.summary_m.Summary method)
to_state() (liesel.goose.epoch.EpochConfig method)
transform() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.model.GraphBuilder method)
TransientCalc (class in liesel.model.nodes)
TransientDist (class in liesel.model.nodes)
TransientIdentity (class in liesel.model.nodes)
TransientNode (class in liesel.model.nodes)
transition (liesel.goose.engine.KernelErrorLog attribute)
transition() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.TransitionMixin method)
(liesel.goose.kernel_sequence.KernelSequence method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
transition_infos (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
TransitionInfo (class in liesel.goose.types)
TransitionMixin (class in liesel.goose.kernel)
TransitionOutcome (class in liesel.goose.kernel)
treedepth (liesel.goose.nuts.NUTSTransitionInfo attribute)
tune() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.TuningMixin method)
(liesel.goose.kernel_sequence.KernelSequence method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
tune_inv_mm_diag() (in module liesel.goose.mm)
tune_inv_mm_full() (in module liesel.goose.mm)
tuning_infos (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
TuningInfo (class in liesel.goose.types)
TuningMixin (class in liesel.goose.kernel)
TuningOutcome (class in liesel.goose.kernel)
turning (liesel.goose.nuts.NUTSTransitionInfo attribute)
type (liesel.goose.epoch.EpochConfig attribute)
U
update() (liesel.model.distreg.DistRegBuilder method)
(liesel.model.legacy.PITCalc method)
(liesel.model.model.GraphBuilder method)
(liesel.model.model.Model method)
(liesel.model.nodes.Calc method)
(liesel.model.nodes.Data method)
(liesel.model.nodes.Dist method)
(liesel.model.nodes.InputGroup method)
(liesel.model.nodes.Node method)
(liesel.model.nodes.TransientCalc method)
(liesel.model.nodes.TransientDist method)
(liesel.model.nodes.TransientIdentity method)
(liesel.model.nodes.TransientNode method)
(liesel.model.nodes.Var method)
update_state() (liesel.experimental.pymc.PyMCInterface method)
(liesel.goose.models.DataClassModel method)
(liesel.goose.models.DictModel method)
(liesel.goose.types.ModelInterface method)
(liesel.model.goose.GooseModel method)
V
value (liesel.model.legacy.PITCalc property)
(liesel.model.nodes.Calc property)
(liesel.model.nodes.Data property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.InputGroup property)
(liesel.model.nodes.Node property)
(liesel.model.nodes.NodeState attribute)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.TransientIdentity property)
(liesel.model.nodes.TransientNode property)
(liesel.model.nodes.Var property)
value_node (liesel.model.nodes.Var property)
Var (class in liesel.model.nodes)
var (liesel.model.legacy.PITCalc property)
(liesel.model.nodes.Calc property)
(liesel.model.nodes.Data property)
(liesel.model.nodes.Dist property)
(liesel.model.nodes.InputGroup property)
(liesel.model.nodes.Node property)
(liesel.model.nodes.TransientCalc property)
(liesel.model.nodes.TransientDist property)
(liesel.model.nodes.TransientIdentity property)
(liesel.model.nodes.TransientNode property)
var_graph (liesel.model.model.Model property)
var_value_node (liesel.model.nodes.Var property)
vars (liesel.model.model.GraphBuilder attribute)
(liesel.model.model.Model property)
W
WarmupOutcome (class in liesel.goose.kernel)
weak (liesel.model.nodes.Var property)