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API Reference
liesel.experimental
liesel.experimental.pymc
PyMCInterface
PyMCInterface.extract_position()
PyMCInterface.get_initial_state()
PyMCInterface.log_prob()
PyMCInterface.update_state()
liesel.liesel
ModelState
ModelState.clear()
ModelState.copy()
ModelState.fromkeys()
ModelState.get()
ModelState.items()
ModelState.keys()
ModelState.pop()
ModelState.popitem()
ModelState.setdefault()
ModelState.update()
ModelState.values()
liesel.liesel.Position
liesel.liesel.distreg
liesel.liesel.distreg.dist_reg_mcmc
liesel.liesel.distreg.tau2_gibbs_kernel
CopRegBuilder
DistRegBuilder
NPSmoothGroup
PSmoothGroup
SmoothGroup
liesel.liesel.goose
liesel.liesel.goose.get_log_prob
liesel.liesel.goose.get_position
liesel.liesel.goose.make_log_prob_fn
liesel.liesel.goose.make_update_state_fn
liesel.liesel.goose.update_state
GooseModel
liesel.liesel.model
liesel.liesel.model.load_model
liesel.liesel.model.save_model
Model
ModelBuilder
liesel.liesel.nodes
liesel.liesel.nodes.transform_parameter
Addition
AdditionCalculator
Bijector
BijectorCalculator
ColumnStack
ColumnStackCalculator
DesignMatrix
Hyperparameter
InverseLink
Node
NodeCalculator
NodeComponent
NodeDistribution
NodeGroup
NodeInputs
PIT
PITCalculator
Parameter
Predictor
RegressionCoef
Response
Smooth
SmoothCalculator
SmoothingParam
liesel.liesel.types
NodeState
liesel.liesel.viz
liesel.liesel.viz.plot_model
liesel.goose
liesel.goose.builder
EngineBuilder
liesel.goose.chain
Chain
EpochChain
EpochChainManager
ListChain
ListEpochChain
liesel.goose.da
liesel.goose.da.da_finalize
liesel.goose.da.da_init
liesel.goose.da.da_step
DAKernelState
liesel.goose.engine
liesel.goose.engine.stack_for_multi
Carry
Engine
KernelErrorLog
SamplingResult
SamplingResults
liesel.goose.epoch
EpochConfig
EpochManager
EpochState
EpochType
liesel.goose.gibbs
GibbsKernel
liesel.goose.hmc
HMCKernel
HMCKernelState
HMCTransitionInfo
liesel.goose.iwls
IWLSKernel
IWLSKernelState
liesel.goose.iwls_utils
liesel.goose.iwls_utils.mvn_log_prob
liesel.goose.iwls_utils.mvn_sample
liesel.goose.iwls_utils.solve
liesel.goose.kernel
DefaultTransitionInfo
DefaultTuningInfo
ModelMixin
TransitionMixin
TransitionOutcome
TuningMixin
TuningOutcome
WarmupOutcome
liesel.goose.kernel_sequence
KerSeqFinalizeWarmupOutput
KerSeqTransitionOutput
KerSeqTuningOutput
KernelSequence
liesel.goose.mh
liesel.goose.mh.mh_error_book
liesel.goose.mh.mh_step
liesel.goose.mh_kernel
MHKernel
MHProposal
liesel.goose.mm
liesel.goose.mm.tune_inv_mm_diag
liesel.goose.mm.tune_inv_mm_full
liesel.goose.models
DataClassModel
DictModel
liesel.goose.nuts
NUTSKernel
NUTSKernelState
NUTSTransitionInfo
liesel.goose.pytree
liesel.goose.pytree.as_strong_pytree
liesel.goose.pytree.concatenate_leaves
liesel.goose.pytree.register_dataclass_as_pytree
liesel.goose.pytree.slice_leaves
liesel.goose.pytree.split_and_transpose
liesel.goose.pytree.split_leaves
liesel.goose.pytree.squeeze_leaves
liesel.goose.pytree.stack_leaves
liesel.goose.rw
RWKernel
RWKernelState
liesel.goose.summary_m
liesel.goose.summary_m.add_hdi
liesel.goose.summary_m.add_num_effective
liesel.goose.summary_m.add_quantiles
liesel.goose.summary_m.add_rhat
liesel.goose.summary_m.adjust_dimensions
liesel.goose.summary_m.collect_param_dfs
liesel.goose.summary_m.collect_param_dicts
liesel.goose.summary_m.collect_subparam_dfs
liesel.goose.summary_m.collect_subparam_dicts
liesel.goose.summary_m.combine_chains
liesel.goose.summary_m.compute_hdi
liesel.goose.summary_m.compute_quantiles
liesel.goose.summary_m.compute_single_hdi
liesel.goose.summary_m.get_param_stats
liesel.goose.summary_m.get_subparam_stats
liesel.goose.summary_m.move_col_first
liesel.goose.summary_m.numpy_to_arviz
liesel.goose.summary_m.raise_chain_indices_error
liesel.goose.summary_m.raise_dimension_error
liesel.goose.summary_m.raise_param_indices_error
liesel.goose.summary_m.subparam_stats_to_df
liesel.goose.summary_m.summary
liesel.goose.summary_m.validate_chain_indices
liesel.goose.summary_m.validate_param_indices
liesel.goose.summary_m.validate_params
ErrorSummaryForOneCode
Summary
liesel.goose.summary_viz
liesel.goose.summary_viz.plot_cor
liesel.goose.summary_viz.plot_density
liesel.goose.summary_viz.plot_pairs
liesel.goose.summary_viz.plot_param
liesel.goose.summary_viz.plot_scatter
liesel.goose.summary_viz.plot_trace
liesel.goose.summary_viz.save_figure
liesel.goose.types
GeneratedQuantity
Kernel
ModelInterface
QuantityGenerator
TransitionInfo
TuningInfo
liesel.goose.warmup
liesel.goose.warmup.stan_epochs
liesel.tfp
liesel.tfp.jax
liesel.tfp.jax.bijectors
liesel.tfp.jax.distributions
liesel.tfp.numpy
liesel.tfp.numpy.bijectors
liesel.tfp.numpy.distributions
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
A
acceptance_prob (liesel.goose.hmc.HMCTransitionInfo attribute)
(liesel.goose.kernel.DefaultTransitionInfo attribute)
(liesel.goose.nuts.NUTSTransitionInfo attribute)
(liesel.goose.types.TransitionInfo attribute)
add_copula() (liesel.liesel.distreg.CopRegBuilder method)
add_groups() (liesel.liesel.distreg.CopRegBuilder method)
(liesel.liesel.distreg.DistRegBuilder method)
(liesel.liesel.model.ModelBuilder method)
add_hdi() (in module liesel.goose.summary_m)
add_kernel() (liesel.goose.builder.EngineBuilder method)
add_nodes() (liesel.liesel.distreg.CopRegBuilder method)
(liesel.liesel.distreg.DistRegBuilder method)
(liesel.liesel.model.ModelBuilder method)
add_np_smooth() (liesel.liesel.distreg.CopRegBuilder method)
(liesel.liesel.distreg.DistRegBuilder method)
add_num_effective() (in module liesel.goose.summary_m)
add_p_smooth() (liesel.liesel.distreg.CopRegBuilder method)
(liesel.liesel.distreg.DistRegBuilder method)
add_predictor() (liesel.liesel.distreg.CopRegBuilder method)
(liesel.liesel.distreg.DistRegBuilder method)
add_quantiles() (in module liesel.goose.summary_m)
add_quantity_generator() (liesel.goose.builder.EngineBuilder method)
add_response() (liesel.liesel.distreg.CopRegBuilder method)
(liesel.liesel.distreg.DistRegBuilder method)
add_rhat() (in module liesel.goose.summary_m)
Addition (class in liesel.liesel.nodes)
AdditionCalculator (class in liesel.liesel.nodes)
adjust_dimensions() (in module liesel.goose.summary_m)
advance_epoch() (liesel.goose.chain.EpochChainManager method)
advance_time() (liesel.goose.epoch.EpochState method)
AlgebraicSigmoid (class in liesel.tfp.jax.bijectors.algebraic_sigmoid)
(class in liesel.tfp.numpy.bijectors.algebraic_sigmoid)
all_nodes() (liesel.liesel.distreg.CopRegBuilder method)
(liesel.liesel.distreg.DistRegBuilder method)
(liesel.liesel.model.ModelBuilder method)
append() (liesel.goose.chain.Chain method)
(liesel.goose.chain.EpochChain method)
(liesel.goose.chain.EpochChainManager method)
(liesel.goose.chain.ListChain method)
(liesel.goose.chain.ListEpochChain method)
(liesel.goose.epoch.EpochManager method)
append_epoch() (liesel.goose.engine.Engine method)
as_strong_pytree() (in module liesel.goose.pytree)
B
Bijector (class in liesel.liesel.nodes)
bijector (liesel.liesel.nodes.BijectorCalculator property)
BijectorCalculator (class in liesel.liesel.nodes)
build() (liesel.goose.builder.EngineBuilder method)
(liesel.liesel.distreg.CopRegBuilder method)
(liesel.liesel.distreg.DistRegBuilder method)
(liesel.liesel.model.ModelBuilder method)
BURNIN (liesel.goose.epoch.EpochType attribute)
C
calculator (liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
Carry (class in liesel.goose.engine)
cdf() (liesel.liesel.nodes.NodeDistribution method)
Chain (class in liesel.goose.chain)
clear() (liesel.liesel.distreg.NPSmoothGroup method)
(liesel.liesel.distreg.PSmoothGroup method)
(liesel.liesel.distreg.SmoothGroup method)
(liesel.liesel.ModelState method)
(liesel.liesel.nodes.NodeGroup method)
collect_param_dfs() (in module liesel.goose.summary_m)
collect_param_dicts() (in module liesel.goose.summary_m)
collect_subparam_dfs() (in module liesel.goose.summary_m)
collect_subparam_dicts() (in module liesel.goose.summary_m)
ColumnStack (class in liesel.liesel.nodes)
ColumnStackCalculator (class in liesel.liesel.nodes)
combine() (liesel.goose.chain.EpochChainManager method)
combine_all() (liesel.goose.chain.EpochChainManager method)
combine_chains() (in module liesel.goose.summary_m)
combine_filtered() (liesel.goose.chain.EpochChainManager method)
compute_hdi() (in module liesel.goose.summary_m)
compute_quantiles() (in module liesel.goose.summary_m)
compute_single_hdi() (in module liesel.goose.summary_m)
concatenate_leaves() (in module liesel.goose.pytree)
config (liesel.goose.epoch.EpochState attribute)
(liesel.goose.summary_m.Summary attribute)
CopRegBuilder (class in liesel.liesel.distreg)
copy() (liesel.liesel.distreg.NPSmoothGroup method)
(liesel.liesel.distreg.PSmoothGroup method)
(liesel.liesel.distreg.SmoothGroup method)
(liesel.liesel.ModelState method)
(liesel.liesel.nodes.NodeGroup method)
count() (liesel.goose.engine.KernelErrorLog method)
(liesel.goose.mh_kernel.MHProposal method)
(liesel.goose.summary_m.ErrorSummaryForOneCode method)
(liesel.liesel.nodes.NodeInputs method)
(liesel.liesel.types.NodeState method)
count_per_chain (liesel.goose.summary_m.ErrorSummaryForOneCode attribute)
count_per_chain_posterior (liesel.goose.summary_m.ErrorSummaryForOneCode attribute)
current_epoch (liesel.goose.chain.EpochChainManager property)
(liesel.goose.engine.Engine property)
D
da_finalize() (in module liesel.goose.da)
da_init() (in module liesel.goose.da)
da_step() (in module liesel.goose.da)
DAKernelState (class in liesel.goose.da)
DataClassModel (class in liesel.goose.models)
DefaultTransitionInfo (class in liesel.goose.kernel)
DefaultTuningInfo (class in liesel.goose.kernel)
DesignMatrix (class in liesel.liesel.nodes)
dict() (liesel.liesel.nodes.NodeInputs method)
DictModel (class in liesel.goose.models)
dist_reg_mcmc() (in module liesel.liesel.distreg)
DistRegBuilder (class in liesel.liesel.distreg)
distribution (liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
distribution() (liesel.liesel.nodes.NodeDistribution method)
divergent (liesel.goose.hmc.HMCTransitionInfo attribute)
(liesel.goose.nuts.NUTSTransitionInfo attribute)
duration (liesel.goose.epoch.EpochConfig attribute)
E
empty_copy() (liesel.liesel.model.Model method)
end_epoch() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel_sequence.KernelSequence method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
end_warmup() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel_sequence.KernelSequence method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
Engine (class in liesel.goose.engine)
engine_seed (liesel.goose.builder.EngineBuilder property)
EngineBuilder (class in liesel.goose.builder)
epoch (liesel.goose.chain.EpochChain property)
(liesel.goose.chain.ListEpochChain property)
(liesel.goose.engine.Carry attribute)
EpochChain (class in liesel.goose.chain)
EpochChainManager (class in liesel.goose.chain)
EpochConfig (class in liesel.goose.epoch)
EpochManager (class in liesel.goose.epoch)
epochs (liesel.goose.builder.EngineBuilder property)
EpochState (class in liesel.goose.epoch)
EpochType (class in liesel.goose.epoch)
error_book (liesel.goose.gibbs.GibbsKernel attribute)
(liesel.goose.hmc.HMCKernel attribute)
(liesel.goose.iwls.IWLSKernel attribute)
(liesel.goose.mh_kernel.MHKernel attribute)
(liesel.goose.nuts.NUTSKernel attribute)
(liesel.goose.rw.RWKernel attribute)
(liesel.goose.types.Kernel attribute)
(liesel.goose.types.QuantityGenerator attribute)
error_code (liesel.goose.hmc.HMCTransitionInfo attribute)
(liesel.goose.kernel.DefaultTransitionInfo attribute)
(liesel.goose.kernel.DefaultTuningInfo attribute)
(liesel.goose.kernel.WarmupOutcome attribute)
(liesel.goose.nuts.NUTSTransitionInfo attribute)
(liesel.goose.summary_m.ErrorSummaryForOneCode attribute)
(liesel.goose.types.GeneratedQuantity attribute)
(liesel.goose.types.TransitionInfo attribute)
(liesel.goose.types.TuningInfo attribute)
error_codes (liesel.goose.engine.KernelErrorLog attribute)
(liesel.goose.kernel_sequence.KerSeqFinalizeWarmupOutput attribute)
error_msg (liesel.goose.summary_m.ErrorSummaryForOneCode attribute)
error_sum (liesel.goose.da.DAKernelState attribute)
(liesel.goose.hmc.HMCKernelState attribute)
(liesel.goose.iwls.IWLSKernelState attribute)
(liesel.goose.nuts.NUTSKernelState attribute)
(liesel.goose.rw.RWKernelState attribute)
error_summary (liesel.goose.summary_m.Summary attribute)
ErrorSummaryForOneCode (class in liesel.goose.summary_m)
extract_position() (liesel.experimental.pymc.PyMCInterface method)
(liesel.goose.models.DataClassModel method)
(liesel.goose.models.DictModel method)
(liesel.goose.types.ModelInterface method)
(liesel.liesel.goose.GooseModel method)
F
FAST_ADAPTATION (liesel.goose.epoch.EpochType attribute)
from_result() (liesel.goose.summary_m.Summary class method)
from_results() (liesel.goose.summary_m.Summary static method)
fromkeys() (liesel.liesel.distreg.NPSmoothGroup method)
(liesel.liesel.distreg.PSmoothGroup method)
(liesel.liesel.distreg.SmoothGroup method)
(liesel.liesel.ModelState method)
(liesel.liesel.nodes.NodeGroup method)
full_model_states (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
G
GaussianCopula (class in liesel.tfp.jax.distributions.copulas)
(class in liesel.tfp.numpy.distributions.copulas)
generate() (liesel.goose.types.QuantityGenerator method)
generated_quantities (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
GeneratedQuantity (class in liesel.goose.types)
get() (liesel.goose.chain.Chain method)
(liesel.goose.chain.EpochChain method)
(liesel.goose.chain.ListChain method)
(liesel.goose.chain.ListEpochChain method)
(liesel.liesel.distreg.NPSmoothGroup method)
(liesel.liesel.distreg.PSmoothGroup method)
(liesel.liesel.distreg.SmoothGroup method)
(liesel.liesel.ModelState method)
(liesel.liesel.nodes.NodeGroup method)
get_current_chain() (liesel.goose.chain.EpochChainManager method)
get_current_epoch() (liesel.goose.chain.EpochChainManager method)
get_epochs() (liesel.goose.chain.EpochChainManager method)
get_error_log() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
get_initial_state() (liesel.experimental.pymc.PyMCInterface method)
get_kernels() (liesel.goose.kernel_sequence.KernelSequence method)
get_kernels_by_pos_key() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
get_log_prob() (in module liesel.liesel.goose)
get_nodes_by_class() (liesel.liesel.model.Model method)
get_nodes_by_regex() (liesel.liesel.model.Model method)
get_param_stats() (in module liesel.goose.summary_m)
get_position() (in module liesel.liesel.goose)
get_posterior_samples() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
get_posterior_transition_infos() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
get_results() (liesel.goose.engine.Engine method)
get_samples() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
get_specific_chain() (liesel.goose.chain.EpochChainManager method)
get_subparam_stats() (in module liesel.goose.summary_m)
get_tuning_times() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
GibbsKernel (class in liesel.goose.gibbs)
GooseModel (class in liesel.liesel.goose)
grad() (liesel.liesel.nodes.Addition method)
(liesel.liesel.nodes.Bijector method)
(liesel.liesel.nodes.ColumnStack method)
(liesel.liesel.nodes.DesignMatrix method)
(liesel.liesel.nodes.Hyperparameter method)
(liesel.liesel.nodes.InverseLink method)
(liesel.liesel.nodes.Node method)
(liesel.liesel.nodes.Parameter method)
(liesel.liesel.nodes.PIT method)
(liesel.liesel.nodes.Predictor method)
(liesel.liesel.nodes.RegressionCoef method)
(liesel.liesel.nodes.Response method)
(liesel.liesel.nodes.Smooth method)
(liesel.liesel.nodes.SmoothingParam method)
graph (liesel.liesel.model.Model attribute)
groups (liesel.liesel.distreg.CopRegBuilder attribute)
(liesel.liesel.distreg.DistRegBuilder attribute)
(liesel.liesel.model.Model attribute)
(liesel.liesel.model.ModelBuilder attribute)
H
has_calculator (liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
has_distribution (liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
has_model (liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
has_model() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.ModelMixin method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
(liesel.goose.types.QuantityGenerator method)
has_more() (liesel.goose.epoch.EpochManager method)
has_name (liesel.liesel.distreg.NPSmoothGroup property)
(liesel.liesel.distreg.PSmoothGroup property)
(liesel.liesel.distreg.SmoothGroup property)
(liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.NodeGroup property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
HMCKernel (class in liesel.goose.hmc)
HMCKernelState (class in liesel.goose.hmc)
HMCTransitionInfo (class in liesel.goose.hmc)
Hyperparameter (class in liesel.liesel.nodes)
I
identifier (liesel.goose.gibbs.GibbsKernel attribute)
(liesel.goose.hmc.HMCKernel attribute)
(liesel.goose.iwls.IWLSKernel attribute)
(liesel.goose.mh_kernel.MHKernel attribute)
(liesel.goose.nuts.NUTSKernel attribute)
(liesel.goose.rw.RWKernel attribute)
(liesel.goose.types.Kernel attribute)
(liesel.goose.types.QuantityGenerator attribute)
index() (liesel.goose.engine.KernelErrorLog method)
(liesel.goose.mh_kernel.MHProposal method)
(liesel.goose.summary_m.ErrorSummaryForOneCode method)
(liesel.liesel.nodes.NodeInputs method)
(liesel.liesel.types.NodeState method)
info (liesel.goose.kernel.TransitionOutcome attribute)
(liesel.goose.kernel.TuningOutcome attribute)
infos (liesel.goose.kernel_sequence.KerSeqTransitionOutput attribute)
(liesel.goose.kernel_sequence.KerSeqTuningOutput attribute)
init_state() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
init_states() (liesel.goose.kernel_sequence.KernelSequence method)
INITIAL_VALUES (liesel.goose.epoch.EpochType attribute)
initialize_with_mean() (liesel.liesel.nodes.Parameter method)
(liesel.liesel.nodes.RegressionCoef method)
(liesel.liesel.nodes.SmoothingParam method)
input_value_changed() (liesel.liesel.nodes.Addition method)
(liesel.liesel.nodes.Bijector method)
(liesel.liesel.nodes.ColumnStack method)
(liesel.liesel.nodes.DesignMatrix method)
(liesel.liesel.nodes.Hyperparameter method)
(liesel.liesel.nodes.InverseLink method)
(liesel.liesel.nodes.Node method)
(liesel.liesel.nodes.Parameter method)
(liesel.liesel.nodes.PIT method)
(liesel.liesel.nodes.Predictor method)
(liesel.liesel.nodes.RegressionCoef method)
(liesel.liesel.nodes.Response method)
(liesel.liesel.nodes.Smooth method)
(liesel.liesel.nodes.SmoothingParam method)
inputs (liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.AdditionCalculator property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.BijectorCalculator property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.ColumnStackCalculator property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.NodeCalculator property)
(liesel.liesel.nodes.NodeComponent property)
(liesel.liesel.nodes.NodeDistribution property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.PITCalculator property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothCalculator property)
(liesel.liesel.nodes.SmoothingParam property)
inverse_mass_matrix (liesel.goose.hmc.HMCKernelState attribute)
(liesel.goose.nuts.NUTSKernelState attribute)
InverseLink (class in liesel.liesel.nodes)
is_adaptation() (liesel.goose.epoch.EpochType static method)
is_sampling_done() (liesel.goose.engine.Engine method)
is_warmup() (liesel.goose.epoch.EpochType static method)
items() (liesel.liesel.distreg.NPSmoothGroup method)
(liesel.liesel.distreg.PSmoothGroup method)
(liesel.liesel.distreg.SmoothGroup method)
(liesel.liesel.ModelState method)
(liesel.liesel.nodes.NodeGroup method)
(liesel.liesel.nodes.NodeInputs method)
IWLSKernel (class in liesel.goose.iwls)
IWLSKernelState (class in liesel.goose.iwls)
J
jaxified (liesel.liesel.model.Model property)
(liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.AdditionCalculator property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.BijectorCalculator property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.ColumnStackCalculator property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.NodeCalculator property)
(liesel.liesel.nodes.NodeComponent property)
(liesel.liesel.nodes.NodeDistribution property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.PITCalculator property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothCalculator property)
(liesel.liesel.nodes.SmoothingParam property)
jaxify() (liesel.liesel.model.Model method)
(liesel.liesel.nodes.Addition method)
(liesel.liesel.nodes.AdditionCalculator method)
(liesel.liesel.nodes.Bijector method)
(liesel.liesel.nodes.BijectorCalculator method)
(liesel.liesel.nodes.ColumnStack method)
(liesel.liesel.nodes.ColumnStackCalculator method)
(liesel.liesel.nodes.DesignMatrix method)
(liesel.liesel.nodes.Hyperparameter method)
(liesel.liesel.nodes.InverseLink method)
(liesel.liesel.nodes.Node method)
(liesel.liesel.nodes.NodeCalculator method)
(liesel.liesel.nodes.NodeComponent method)
(liesel.liesel.nodes.NodeDistribution method)
(liesel.liesel.nodes.Parameter method)
(liesel.liesel.nodes.PIT method)
(liesel.liesel.nodes.PITCalculator method)
(liesel.liesel.nodes.Predictor method)
(liesel.liesel.nodes.RegressionCoef method)
(liesel.liesel.nodes.Response method)
(liesel.liesel.nodes.Smooth method)
(liesel.liesel.nodes.SmoothCalculator method)
(liesel.liesel.nodes.SmoothingParam method)
K
Kernel (class in liesel.goose.types)
kernel_classes (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
kernel_cls (liesel.goose.engine.KernelErrorLog attribute)
kernel_ident (liesel.goose.engine.KernelErrorLog attribute)
kernel_state (liesel.goose.kernel.TransitionOutcome attribute)
(liesel.goose.kernel.TuningOutcome attribute)
(liesel.goose.kernel.WarmupOutcome attribute)
kernel_states (liesel.goose.engine.Carry attribute)
(liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
(liesel.goose.kernel_sequence.KerSeqFinalizeWarmupOutput attribute)
(liesel.goose.kernel_sequence.KerSeqTransitionOutput attribute)
(liesel.goose.kernel_sequence.KerSeqTuningOutput attribute)
KernelErrorLog (class in liesel.goose.engine)
kernels (liesel.goose.builder.EngineBuilder property)
kernels_by_pos_key (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
(liesel.goose.summary_m.Summary attribute)
KernelSequence (class in liesel.goose.kernel_sequence)
KerSeqFinalizeWarmupOutput (class in liesel.goose.kernel_sequence)
KerSeqTransitionOutput (class in liesel.goose.kernel_sequence)
KerSeqTuningOutput (class in liesel.goose.kernel_sequence)
keys() (liesel.liesel.distreg.NPSmoothGroup method)
(liesel.liesel.distreg.PSmoothGroup method)
(liesel.liesel.distreg.SmoothGroup method)
(liesel.liesel.ModelState method)
(liesel.liesel.nodes.NodeGroup method)
(liesel.liesel.nodes.NodeInputs method)
L
leapfrog (liesel.goose.nuts.NUTSTransitionInfo attribute)
liesel.experimental
module
liesel.experimental.pymc
module
liesel.goose
module
liesel.goose.builder
module
liesel.goose.chain
module
liesel.goose.da
module
liesel.goose.engine
module
liesel.goose.epoch
module
liesel.goose.gibbs
module
liesel.goose.hmc
module
liesel.goose.iwls
module
liesel.goose.iwls_utils
module
liesel.goose.kernel
module
liesel.goose.kernel_sequence
module
liesel.goose.mh
module
liesel.goose.mh_kernel
module
liesel.goose.mm
module
liesel.goose.models
module
liesel.goose.nuts
module
liesel.goose.pytree
module
liesel.goose.rw
module
liesel.goose.summary_m
module
liesel.goose.summary_viz
module
liesel.goose.types
module
liesel.goose.warmup
module
liesel.liesel
module
liesel.liesel.distreg
module
liesel.liesel.goose
module
liesel.liesel.model
module
liesel.liesel.nodes
module
liesel.liesel.types
module
liesel.liesel.viz
module
liesel.tfp
module
liesel.tfp.jax
module
liesel.tfp.jax.bijectors
module
liesel.tfp.jax.bijectors.algebraic_sigmoid
module
liesel.tfp.jax.distributions
module
liesel.tfp.jax.distributions.copulas
module
liesel.tfp.jax.distributions.smooth_prior
module
liesel.tfp.numpy
module
liesel.tfp.numpy.bijectors
module
liesel.tfp.numpy.bijectors.algebraic_sigmoid
module
liesel.tfp.numpy.distributions
module
liesel.tfp.numpy.distributions.copulas
module
liesel.tfp.numpy.distributions.smooth_prior
module
ListChain (class in liesel.goose.chain)
ListEpochChain (class in liesel.goose.chain)
load_model() (in module liesel.liesel.model)
log_avg_step_size (liesel.goose.da.DAKernelState attribute)
(liesel.goose.hmc.HMCKernelState attribute)
(liesel.goose.iwls.IWLSKernelState attribute)
(liesel.goose.nuts.NUTSKernelState attribute)
(liesel.goose.rw.RWKernelState attribute)
log_correction (liesel.goose.mh_kernel.MHProposal attribute)
log_prob (liesel.liesel.model.Model property)
(liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
(liesel.liesel.types.NodeState attribute)
log_prob() (liesel.experimental.pymc.PyMCInterface method)
(liesel.goose.models.DataClassModel method)
(liesel.goose.models.DictModel method)
(liesel.goose.types.ModelInterface method)
(liesel.liesel.goose.GooseModel method)
(liesel.liesel.nodes.NodeDistribution method)
log_prob_fn() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.ModelMixin method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
M
make_log_prob_fn() (in module liesel.liesel.goose)
make_update_state_fn() (in module liesel.liesel.goose)
mean() (liesel.liesel.nodes.NodeDistribution method)
mh_error_book (in module liesel.goose.mh)
mh_step() (in module liesel.goose.mh)
MHKernel (class in liesel.goose.mh_kernel)
MHProposal (class in liesel.goose.mh_kernel)
minimize() (liesel.goose.hmc.HMCTransitionInfo method)
(liesel.goose.kernel.DefaultTransitionInfo method)
(liesel.goose.nuts.NUTSTransitionInfo method)
(liesel.goose.types.TransitionInfo method)
Model (class in liesel.liesel.model)
model (liesel.goose.gibbs.GibbsKernel property)
(liesel.goose.hmc.HMCKernel property)
(liesel.goose.iwls.IWLSKernel property)
(liesel.goose.kernel.ModelMixin property)
(liesel.goose.mh_kernel.MHKernel property)
(liesel.goose.nuts.NUTSKernel property)
(liesel.goose.rw.RWKernel property)
(liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
model_state (liesel.goose.builder.EngineBuilder property)
(liesel.goose.engine.Carry attribute)
(liesel.goose.kernel.TransitionOutcome attribute)
(liesel.goose.kernel_sequence.KerSeqTransitionOutput attribute)
ModelBuilder (class in liesel.liesel.model)
ModelInterface (class in liesel.goose.types)
ModelMixin (class in liesel.goose.kernel)
ModelState (in module liesel.liesel)
module
liesel.experimental
liesel.experimental.pymc
liesel.goose
liesel.goose.builder
liesel.goose.chain
liesel.goose.da
liesel.goose.engine
liesel.goose.epoch
liesel.goose.gibbs
liesel.goose.hmc
liesel.goose.iwls
liesel.goose.iwls_utils
liesel.goose.kernel
liesel.goose.kernel_sequence
liesel.goose.mh
liesel.goose.mh_kernel
liesel.goose.mm
liesel.goose.models
liesel.goose.nuts
liesel.goose.pytree
liesel.goose.rw
liesel.goose.summary_m
liesel.goose.summary_viz
liesel.goose.types
liesel.goose.warmup
liesel.liesel
liesel.liesel.distreg
liesel.liesel.goose
liesel.liesel.model
liesel.liesel.nodes
liesel.liesel.types
liesel.liesel.viz
liesel.tfp
liesel.tfp.jax
liesel.tfp.jax.bijectors
liesel.tfp.jax.bijectors.algebraic_sigmoid
liesel.tfp.jax.distributions
liesel.tfp.jax.distributions.copulas
liesel.tfp.jax.distributions.smooth_prior
liesel.tfp.numpy
liesel.tfp.numpy.bijectors
liesel.tfp.numpy.bijectors.algebraic_sigmoid
liesel.tfp.numpy.distributions
liesel.tfp.numpy.distributions.copulas
liesel.tfp.numpy.distributions.smooth_prior
move_col_first() (in module liesel.goose.summary_m)
mu (liesel.goose.da.DAKernelState attribute)
(liesel.goose.hmc.HMCKernelState attribute)
(liesel.goose.iwls.IWLSKernelState attribute)
(liesel.goose.nuts.NUTSKernelState attribute)
(liesel.goose.rw.RWKernelState attribute)
mvn_log_prob() (in module liesel.goose.iwls_utils)
mvn_sample() (in module liesel.goose.iwls_utils)
N
name (liesel.liesel.distreg.NPSmoothGroup property)
(liesel.liesel.distreg.PSmoothGroup property)
(liesel.liesel.distreg.SmoothGroup property)
(liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.NodeGroup property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
needs_history (liesel.goose.gibbs.GibbsKernel attribute)
(liesel.goose.hmc.HMCKernel attribute)
(liesel.goose.iwls.IWLSKernel attribute)
(liesel.goose.mh_kernel.MHKernel attribute)
(liesel.goose.nuts.NUTSKernel attribute)
(liesel.goose.rw.RWKernel attribute)
(liesel.goose.types.Kernel attribute)
next() (liesel.goose.epoch.EpochManager method)
Node (class in liesel.liesel.nodes)
NodeCalculator (class in liesel.liesel.nodes)
NodeComponent (class in liesel.liesel.nodes)
NodeDistribution (class in liesel.liesel.nodes)
NodeGroup (class in liesel.liesel.nodes)
NodeInputs (class in liesel.liesel.nodes)
nodes (liesel.liesel.distreg.CopRegBuilder attribute)
(liesel.liesel.distreg.DistRegBuilder attribute)
(liesel.liesel.model.Model attribute)
(liesel.liesel.model.ModelBuilder attribute)
NodeState (class in liesel.liesel.types)
NPSmoothGroup (class in liesel.liesel.distreg)
nth_epoch (liesel.goose.epoch.EpochState attribute)
numpy_to_arviz() (in module liesel.goose.summary_m)
NUTSKernel (class in liesel.goose.nuts)
NUTSKernelState (class in liesel.goose.nuts)
NUTSTransitionInfo (class in liesel.goose.nuts)
O
optional (liesel.goose.epoch.EpochConfig attribute)
outdated (liesel.liesel.nodes.Addition attribute)
(liesel.liesel.nodes.Bijector attribute)
(liesel.liesel.nodes.ColumnStack attribute)
(liesel.liesel.nodes.DesignMatrix attribute)
(liesel.liesel.nodes.Hyperparameter attribute)
(liesel.liesel.nodes.InverseLink attribute)
(liesel.liesel.nodes.Node attribute)
(liesel.liesel.nodes.Parameter attribute)
(liesel.liesel.nodes.PIT attribute)
(liesel.liesel.nodes.Predictor attribute)
(liesel.liesel.nodes.RegressionCoef attribute)
(liesel.liesel.nodes.Response attribute)
(liesel.liesel.nodes.Smooth attribute)
(liesel.liesel.nodes.SmoothingParam attribute)
outputs (liesel.liesel.nodes.Addition attribute)
(liesel.liesel.nodes.Bijector attribute)
(liesel.liesel.nodes.ColumnStack attribute)
(liesel.liesel.nodes.DesignMatrix attribute)
(liesel.liesel.nodes.Hyperparameter attribute)
(liesel.liesel.nodes.InverseLink attribute)
(liesel.liesel.nodes.Node attribute)
(liesel.liesel.nodes.Parameter attribute)
(liesel.liesel.nodes.PIT attribute)
(liesel.liesel.nodes.Predictor attribute)
(liesel.liesel.nodes.RegressionCoef attribute)
(liesel.liesel.nodes.Response attribute)
(liesel.liesel.nodes.Smooth attribute)
(liesel.liesel.nodes.SmoothingParam attribute)
own_value_changed() (liesel.liesel.nodes.Addition method)
(liesel.liesel.nodes.Bijector method)
(liesel.liesel.nodes.ColumnStack method)
(liesel.liesel.nodes.DesignMatrix method)
(liesel.liesel.nodes.Hyperparameter method)
(liesel.liesel.nodes.InverseLink method)
(liesel.liesel.nodes.Node method)
(liesel.liesel.nodes.Parameter method)
(liesel.liesel.nodes.PIT method)
(liesel.liesel.nodes.Predictor method)
(liesel.liesel.nodes.RegressionCoef method)
(liesel.liesel.nodes.Response method)
(liesel.liesel.nodes.Smooth method)
(liesel.liesel.nodes.SmoothingParam method)
P
Parameter (class in liesel.liesel.nodes)
per_chain (liesel.goose.summary_m.Summary attribute)
PIT (class in liesel.liesel.nodes)
PITCalculator (class in liesel.liesel.nodes)
pkl_load() (liesel.goose.engine.SamplingResult static method)
(liesel.goose.engine.SamplingResults static method)
pkl_save() (liesel.goose.engine.SamplingResult method)
(liesel.goose.engine.SamplingResults method)
plot_cor() (in module liesel.goose.summary_viz)
plot_density() (in module liesel.goose.summary_viz)
plot_model() (in module liesel.liesel.viz)
plot_pairs() (in module liesel.goose.summary_viz)
plot_param() (in module liesel.goose.summary_viz)
plot_scatter() (in module liesel.goose.summary_viz)
plot_trace() (in module liesel.goose.summary_viz)
pop() (liesel.liesel.distreg.NPSmoothGroup method)
(liesel.liesel.distreg.PSmoothGroup method)
(liesel.liesel.distreg.SmoothGroup method)
(liesel.liesel.ModelState method)
(liesel.liesel.nodes.NodeGroup method)
popitem() (liesel.liesel.distreg.NPSmoothGroup method)
(liesel.liesel.distreg.PSmoothGroup method)
(liesel.liesel.distreg.SmoothGroup method)
(liesel.liesel.ModelState method)
(liesel.liesel.nodes.NodeGroup method)
Position (in module liesel.liesel)
position (liesel.goose.mh_kernel.MHProposal attribute)
position() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.ModelMixin method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
position_keys (liesel.goose.gibbs.GibbsKernel attribute)
(liesel.goose.hmc.HMCKernel attribute)
(liesel.goose.iwls.IWLSKernel attribute)
(liesel.goose.kernel.ModelMixin attribute)
(liesel.goose.mh_kernel.MHKernel attribute)
(liesel.goose.nuts.NUTSKernel attribute)
(liesel.goose.rw.RWKernel attribute)
(liesel.goose.types.Kernel attribute)
position_moved (liesel.goose.hmc.HMCTransitionInfo attribute)
(liesel.goose.kernel.DefaultTransitionInfo attribute)
(liesel.goose.nuts.NUTSTransitionInfo attribute)
(liesel.goose.types.TransitionInfo attribute)
positions (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
positions_excluded (liesel.goose.builder.EngineBuilder attribute)
positions_included (liesel.goose.builder.EngineBuilder attribute)
POSTERIOR (liesel.goose.epoch.EpochType attribute)
Predictor (class in liesel.liesel.nodes)
PSmoothGroup (class in liesel.liesel.distreg)
PyMCInterface (class in liesel.experimental.pymc)
Q
quantities (liesel.goose.summary_m.Summary attribute)
quantity_generators (liesel.goose.builder.EngineBuilder property)
QuantityGenerator (class in liesel.goose.types)
R
raise_chain_indices_error() (in module liesel.goose.summary_m)
raise_dimension_error() (in module liesel.goose.summary_m)
raise_param_indices_error() (in module liesel.goose.summary_m)
register_dataclass_as_pytree() (in module liesel.goose.pytree)
RegressionCoef (class in liesel.liesel.nodes)
replace() (liesel.liesel.nodes.NodeInputs method)
Response (class in liesel.liesel.nodes)
response (liesel.liesel.distreg.CopRegBuilder property)
(liesel.liesel.distreg.DistRegBuilder property)
RWKernel (class in liesel.goose.rw)
RWKernelState (class in liesel.goose.rw)
S
sample() (liesel.liesel.nodes.NodeDistribution method)
sample_all_epochs() (liesel.goose.engine.Engine method)
sample_info (liesel.goose.summary_m.Summary attribute)
sample_next_epoch() (liesel.goose.engine.Engine method)
SamplingResult (class in liesel.goose.engine)
SamplingResults (class in liesel.goose.engine)
save_figure() (in module liesel.goose.summary_viz)
save_model() (in module liesel.liesel.model)
set_duration() (liesel.goose.builder.EngineBuilder method)
set_engine_seed() (liesel.goose.builder.EngineBuilder method)
set_epochs() (liesel.goose.builder.EngineBuilder method)
set_initial_values() (liesel.goose.builder.EngineBuilder method)
set_model() (liesel.goose.builder.EngineBuilder method)
(liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.ModelMixin method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
(liesel.goose.types.QuantityGenerator method)
set_value() (liesel.liesel.nodes.Addition method)
(liesel.liesel.nodes.Bijector method)
(liesel.liesel.nodes.ColumnStack method)
(liesel.liesel.nodes.DesignMatrix method)
(liesel.liesel.nodes.Hyperparameter method)
(liesel.liesel.nodes.InverseLink method)
(liesel.liesel.nodes.Node method)
(liesel.liesel.nodes.Parameter method)
(liesel.liesel.nodes.PIT method)
(liesel.liesel.nodes.Predictor method)
(liesel.liesel.nodes.RegressionCoef method)
(liesel.liesel.nodes.Response method)
(liesel.liesel.nodes.Smooth method)
(liesel.liesel.nodes.SmoothingParam method)
setdefault() (liesel.liesel.distreg.NPSmoothGroup method)
(liesel.liesel.distreg.PSmoothGroup method)
(liesel.liesel.distreg.SmoothGroup method)
(liesel.liesel.ModelState method)
(liesel.liesel.nodes.NodeGroup method)
slice_leaves() (in module liesel.goose.pytree)
SLOW_ADAPTATION (liesel.goose.epoch.EpochType attribute)
Smooth (class in liesel.liesel.nodes)
SmoothCalculator (class in liesel.liesel.nodes)
SmoothGroup (class in liesel.liesel.distreg)
SmoothingParam (class in liesel.liesel.nodes)
SmoothPrior (class in liesel.tfp.jax.distributions.smooth_prior)
(class in liesel.tfp.numpy.distributions.smooth_prior)
solve() (in module liesel.goose.iwls_utils)
sorted_nodes (liesel.liesel.model.Model attribute)
split_and_transpose() (in module liesel.goose.pytree)
split_leaves() (in module liesel.goose.pytree)
squeeze_leaves() (in module liesel.goose.pytree)
stack_for_multi() (in module liesel.goose.engine)
stack_leaves() (in module liesel.goose.pytree)
stan_epochs() (in module liesel.goose.warmup)
start_epoch() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel_sequence.KernelSequence method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
state (liesel.liesel.model.Model property)
(liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
step_size (liesel.goose.da.DAKernelState attribute)
(liesel.goose.hmc.HMCKernelState attribute)
(liesel.goose.iwls.IWLSKernelState attribute)
(liesel.goose.nuts.NUTSKernelState attribute)
(liesel.goose.rw.RWKernelState attribute)
strong (liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
subparam_stats_to_df() (in module liesel.goose.summary_m)
Summary (class in liesel.goose.summary_m)
summary() (in module liesel.goose.summary_m)
T
tau2_gibbs_kernel() (in module liesel.liesel.distreg)
thinning (liesel.goose.epoch.EpochConfig attribute)
time (liesel.goose.epoch.EpochState attribute)
(liesel.goose.kernel.DefaultTuningInfo attribute)
(liesel.goose.types.TuningInfo attribute)
time_before_epoch (liesel.goose.epoch.EpochState attribute)
time_in_epoch (liesel.goose.epoch.EpochState attribute)
time_left() (liesel.goose.epoch.EpochState method)
to_dataframe() (liesel.goose.summary_m.Summary method)
to_state() (liesel.goose.epoch.EpochConfig method)
transform() (liesel.liesel.nodes.NodeDistribution method)
transform_parameter() (in module liesel.liesel.nodes)
(liesel.liesel.model.Model method)
transition (liesel.goose.engine.KernelErrorLog attribute)
transition() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.TransitionMixin method)
(liesel.goose.kernel_sequence.KernelSequence method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
transition_infos (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
TransitionInfo (class in liesel.goose.types)
TransitionMixin (class in liesel.goose.kernel)
TransitionOutcome (class in liesel.goose.kernel)
treedepth (liesel.goose.nuts.NUTSTransitionInfo attribute)
tune() (liesel.goose.gibbs.GibbsKernel method)
(liesel.goose.hmc.HMCKernel method)
(liesel.goose.iwls.IWLSKernel method)
(liesel.goose.kernel.TuningMixin method)
(liesel.goose.kernel_sequence.KernelSequence method)
(liesel.goose.mh_kernel.MHKernel method)
(liesel.goose.nuts.NUTSKernel method)
(liesel.goose.rw.RWKernel method)
(liesel.goose.types.Kernel method)
tune_inv_mm_diag() (in module liesel.goose.mm)
tune_inv_mm_full() (in module liesel.goose.mm)
tuning_infos (liesel.goose.engine.SamplingResult attribute)
(liesel.goose.engine.SamplingResults attribute)
TuningInfo (class in liesel.goose.types)
TuningMixin (class in liesel.goose.kernel)
TuningOutcome (class in liesel.goose.kernel)
turning (liesel.goose.nuts.NUTSTransitionInfo attribute)
type (liesel.goose.epoch.EpochConfig attribute)
U
unjaxify() (liesel.liesel.model.Model method)
(liesel.liesel.nodes.Addition method)
(liesel.liesel.nodes.AdditionCalculator method)
(liesel.liesel.nodes.Bijector method)
(liesel.liesel.nodes.BijectorCalculator method)
(liesel.liesel.nodes.ColumnStack method)
(liesel.liesel.nodes.ColumnStackCalculator method)
(liesel.liesel.nodes.DesignMatrix method)
(liesel.liesel.nodes.Hyperparameter method)
(liesel.liesel.nodes.InverseLink method)
(liesel.liesel.nodes.Node method)
(liesel.liesel.nodes.NodeCalculator method)
(liesel.liesel.nodes.NodeComponent method)
(liesel.liesel.nodes.NodeDistribution method)
(liesel.liesel.nodes.Parameter method)
(liesel.liesel.nodes.PIT method)
(liesel.liesel.nodes.PITCalculator method)
(liesel.liesel.nodes.Predictor method)
(liesel.liesel.nodes.RegressionCoef method)
(liesel.liesel.nodes.Response method)
(liesel.liesel.nodes.Smooth method)
(liesel.liesel.nodes.SmoothCalculator method)
(liesel.liesel.nodes.SmoothingParam method)
update() (liesel.liesel.distreg.NPSmoothGroup method)
(liesel.liesel.distreg.PSmoothGroup method)
(liesel.liesel.distreg.SmoothGroup method)
(liesel.liesel.model.Model method)
(liesel.liesel.ModelState method)
(liesel.liesel.nodes.Addition method)
(liesel.liesel.nodes.Bijector method)
(liesel.liesel.nodes.ColumnStack method)
(liesel.liesel.nodes.DesignMatrix method)
(liesel.liesel.nodes.Hyperparameter method)
(liesel.liesel.nodes.InverseLink method)
(liesel.liesel.nodes.Node method)
(liesel.liesel.nodes.NodeGroup method)
(liesel.liesel.nodes.Parameter method)
(liesel.liesel.nodes.PIT method)
(liesel.liesel.nodes.Predictor method)
(liesel.liesel.nodes.RegressionCoef method)
(liesel.liesel.nodes.Response method)
(liesel.liesel.nodes.Smooth method)
(liesel.liesel.nodes.SmoothingParam method)
update_state() (in module liesel.liesel.goose)
(liesel.experimental.pymc.PyMCInterface method)
(liesel.goose.models.DataClassModel method)
(liesel.goose.models.DictModel method)
(liesel.goose.types.ModelInterface method)
(liesel.liesel.goose.GooseModel method)
V
validate() (liesel.liesel.nodes.Addition method)
(liesel.liesel.nodes.Bijector method)
(liesel.liesel.nodes.ColumnStack method)
(liesel.liesel.nodes.DesignMatrix method)
(liesel.liesel.nodes.Hyperparameter method)
(liesel.liesel.nodes.InverseLink method)
(liesel.liesel.nodes.Node method)
(liesel.liesel.nodes.Parameter method)
(liesel.liesel.nodes.PIT method)
(liesel.liesel.nodes.Predictor method)
(liesel.liesel.nodes.RegressionCoef method)
(liesel.liesel.nodes.Response method)
(liesel.liesel.nodes.Smooth method)
(liesel.liesel.nodes.SmoothingParam method)
validate_chain_indices() (in module liesel.goose.summary_m)
validate_param_indices() (in module liesel.goose.summary_m)
validate_params() (in module liesel.goose.summary_m)
value (liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)
(liesel.liesel.types.NodeState attribute)
value() (liesel.liesel.nodes.AdditionCalculator method)
(liesel.liesel.nodes.BijectorCalculator method)
(liesel.liesel.nodes.ColumnStackCalculator method)
(liesel.liesel.nodes.NodeCalculator method)
(liesel.liesel.nodes.PITCalculator method)
(liesel.liesel.nodes.SmoothCalculator method)
values() (liesel.liesel.distreg.NPSmoothGroup method)
(liesel.liesel.distreg.PSmoothGroup method)
(liesel.liesel.distreg.SmoothGroup method)
(liesel.liesel.ModelState method)
(liesel.liesel.nodes.NodeGroup method)
(liesel.liesel.nodes.NodeInputs method)
W
WarmupOutcome (class in liesel.goose.kernel)
weak (liesel.liesel.nodes.Addition property)
(liesel.liesel.nodes.Bijector property)
(liesel.liesel.nodes.ColumnStack property)
(liesel.liesel.nodes.DesignMatrix property)
(liesel.liesel.nodes.Hyperparameter property)
(liesel.liesel.nodes.InverseLink property)
(liesel.liesel.nodes.Node property)
(liesel.liesel.nodes.Parameter property)
(liesel.liesel.nodes.PIT property)
(liesel.liesel.nodes.Predictor property)
(liesel.liesel.nodes.RegressionCoef property)
(liesel.liesel.nodes.Response property)
(liesel.liesel.nodes.Smooth property)
(liesel.liesel.nodes.SmoothingParam property)